Animal-Free Screening For Nephrotoxicity

By combining iPS cells with machine learning, researchers have developed an efficient and accurate screening platform to detect compounds that are toxic to the kidneys.

AsianScientist (Oct. 23, 2015) – Researchers from the Institute of Bioengineering and Nanotechnology (IBN) have developed the first animal-free screening platforms capable of predicting the toxic effects of compounds on the human kidney accurately. Their latest technological advancement, published in Scientific Reports, involved the use of human induced pluripotent stem cells (iPSCs).

To realize this study, the scientists have developed an effective way of producing human renal cells from iPSCs, and have combined this with machine learning methods that improved the automated and accurate prediction of nephrotoxicity. In addition to predicting toxicity, the novel iPSC-based platform also correctly identifies injury mechanisms, which can help to advance understanding of the tested compounds.

IBN Executive Director Professor Jackie Y. Ying says, “Our new kidney screening platforms will be very useful for many industries that require a reliable tool for evaluating the safety of compounds and ingredients. For example, the chemical and pharmaceutical industries produce a large number of new compounds that need to be screened and tested. Likewise, there is a demand in the food and consumer care industries for efficient lab tools to predict the safety of novel ingredients in their products.”

Due to their role in the elimination of drugs and other foreign compounds from the body, the kidneys are a main target for compound-induced toxicity. Many widely used chemicals and drugs, such as anti-cancer drugs, antibiotics and immunosuppressants, are harmful to the kidneys and may cause organ damage or failure.

Indeed, approximately 20 percent of hospital and community acquired cases of acute kidney injury were caused by such compounds. This poses serious problems to patients and doctors. Further, a drug’s toxic effect on the kidney would typically be discovered only in the late stages of drug development or even after the product has been marketed. Therefore, the ability to determine a new drug’s toxicity earlier in the development phase would be of great interest to pharmaceutical companies, which could spend approximately US$1-2 billion on average to develop a new drug.

Among the many challenges associated with using animal models to predict the nephrotoxicity of a new compound are the long time required, high costs involved, unreliable results due to inter-species differences, as well as ethical issues.

Therefore, researchers have focused their efforts on developing cell-based screening methods. Animal-free screening methods are now also mandatory for cosmetic companies selling their products in the EU, India and Israel after the implementation of animal testing bans in these countries. Validated and accepted animal-free methods for predicting nephrotoxicity are currently not available in the market.

Over the past three and a half years, a research team led by IBN Team Leader and Principal Research Scientist Dr. Daniele Zink has developed the first cell-based renal screening platforms that can predict nephrotoxicity in humans with high accuracy. Earlier versions of these platforms were based on human primary renal proximal tubular cells or similar cells derived from human embryonic stem cells or hESCs.

However, primary cells that are directly harvested from the human body are associated with various problems, such as limited availability, while the use of hESCs may give rise to ethical and legal concerns. Therefore, the researchers worked on an approach using human iPSCs.

As iPSCs can be generated from cells that are easily available in any person (e.g. cells growing on the body surface), they could also be used to develop patient- and disease-specific models. Such models would help to provide a better understanding of renal disease and facilitate the development of personalized therapies and drugs.

According to Zink, “We have developed the fastest and most efficient protocol for generating kidney cells from induced pluripotent stem cells. Within eight days, it yielded highly pure kidney cells that were suitable for compound screening.”

“We also worked closely with Dr. Loo Lit-Hsin’s team from the Bioinformatics Institute, which developed the data analysis procedures and machine learning methods that allow us to predict drug-induced nephrotoxicity with great accuracy. We were further able to identify injury mechanisms and drug-induced cellular pathways by using automated cellular imaging. We hope that our work will contribute to the development of safer products in future.”

The article can be found at: Kandasamy et al. (2015) Prediction of Drug-Induced Nephrotoxicity and Injury Mechanisms with Human Induced Pluripotent Stem Cell-Derived Cells and Machine Learning Methods.


Source: Agency for Science, Technology and Research.
Disclaimer: This article does not necessarily reflect the views of AsianScientist or its staff.

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